Whatever works best for you, but what is very important is that AutoRestore/Quarantine is turned Off in BPS Pro when doing migrations. You do not want ARQ trying to check things while you are changing things because ARQ will see that as an attack and take action – quarantine/autorestore files, etc. If you turned Off ARQ prior to creating your clone then you should not run into a problem with files being quarantined or autorestored during the migration.
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